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  1. mspms::all_possible_8mers_from_228_library
    all_possible_8mers_from_228_library All possible 8mers from the standard (as of 26April2024) 228 MSP-MS peptide library (This is equivalent to the result of mspms::calculate_all_cleavages(mspms::peptide_library$real_cleavage_seq,n=4)) vector of the 14 AA peptides used in the library.
    json| rda| rds
    character
  2. mspms::colData
    colData A tibble containing the colData associated with an experiment to proc
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|12 x 4
  3. mspms::log2fc_t_test_data
    log2fc_t_test_data A tibble containing the results of t-tests and log2fc compared to time 0 14,497 × 19
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4142 x 21
  4. mspms::mspms_tidy_data
    mspms_tidy_data A tibble containing tidy data derived from QFeatures object
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|24852 x 13
  5. mspms::peaks_prepared_data
    peaks_prepared_data A QFeatures object prepared from PEAKS data of cathepsin data/.
    rda| rds
    QFeatures
  6. mspms::peptide_library
    peptide_library
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|228 x 3
  7. mspms::processed_qf
    processed_qf A QFeatures object prepared from PEAKS data of Cathepsin data that has been processed (imputation/normalization)
    rda| rds
    QFeatures